New Bioinformatics for Linux

Geant4 project is a toolkit for the simulation of the passage of particles through matter.Its application areas include high energy physics and nuclear experiments, medical, accelerator and space physics studies.What is new in this release:A new model of...

The STEME project started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME.STEME’s EM approximation runs an order of magnitude more quickly than the MEME implementation for...

Genepidgin is a suite of Python tools that assist in evaluation and assignment gene product names. There are three primary components:genepidgin *cleaner* standardizes gene names per UNIPROT naming guidelinesgenepidgin *compare* compares...

CaPSID is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a...

MISO (Mixture of Isoforms) is a probabilistic framework written in Python that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples.By modeling the...

MACS2 is a model based analysis tool for ChIP-Seq data.With the improvement of sequencing techniques, chromatin immunoprecipitation followed by high throughput sequencing (ChIP-Seq) is getting popular to study genome-wide protein-DNA interactions. To...

biotools is a bunch of bioinformatics utilities written in...

PathVisio is an open source and completely free graphical application implemented in the Java programming language and designed from the ground up to be used for displaying, analyzing and editing biological pathways under a GNU/Linux operating system.Can...

Pathomx (formerly MetaPath) is an open source graphical software implemented in IPython, Qt and PyQt, designed from the ground up to act as an interactive utility for the visualization and analysis of metabolic data under GNU/Linux and other...