New Bioinformatics for Linux

Seal is a Python module that provides sequence alignment on Hadoop.Seal is a of MapReduce application for biological sequence alignment. It runs on Hadoop (http://hadoop.apache.org) through Pydoop (http://pydoop.sourceforge.net), a Python MapReduce and...

avalanchetoolbox is a toolbox for identifying and describing branching processes, such as neuronal avalanches.Requirements:cursor-pointer" onclick="spovl3hide();"> System requirements for this...

Murka is a free, cross-platform and open source command-line software that helps users to easily solve the Phylogeny problem, simply by using Median Networks. It includes heuristic methods, exact algorithms, as well as a Steiner problem...

HTSeq is a Python framework to process and analyze data from high-throughput sequencing (HTS)...

Orange-Bioinformatics is an Orange data mining software package add-on. It extends Orange by providing common functionality for basic tasks in bioinformatics. It also provides widgets for Orange Canvas, which enable users who are not programmers to...

edittag is an application collection for designing sets of edit metric sequence tags, checking sequence tags for conformation to the edit metric, and integrating sequence tags to platform-specific sequencing adapters and PCR primers. edittag differs from...

VULCAN project provides computational fluid dynamics analysis.VULCAN (Viscous Upwind aLgorithm for Complex flow ANalysis) offers computational fluid dynamics for subsonic speed through hypersonic turbulent reacting and non-reacting flows on a variety of...

seriesoftubes is an extended pipeline for Solexa ChIP-seq data.Package...

reciprocal_smallest_distance is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.Installing From a TarballDownload and untar...

Build systems like make are frequently used to create complicated workflows, e.g. in bioinformatics. snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in python...