Best Bioinformatics for Linux

Geant4 project is a toolkit for the simulation of the passage of particles through matter.Its application areas include high energy physics and nuclear experiments, medical, accelerator and space physics studies.What is new in this release:A new model of...

pyNetConv is a Python library created to help the conversion of some network file formats.Since version 0.6, pyNetConv is capable to read/write (and convert from/to) the following file...

Jmol is an open source, cross-platform and free graphical software that has been originally designed to act as molecular viewer for 3D chemical structures. It runs in four standalone modes, as a HTML5 web app, a Java program, a Java applet, and a...

GDIS is a GTK based program for the display and manipulation of isolated molecules and periodic systems. This software is in development, but is nonetheless quite functional.Here are some key features of...

CLC Sequence Viewer creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options.Here are some key features of "CLC Free Workbench":- GenBank...

PathVisio is an open source and completely free graphical application implemented in the Java programming language and designed from the ground up to be used for displaying, analyzing and editing biological pathways under a GNU/Linux operating system.Can...

Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API.The quick start guide is here. More detailed documentation is available here.Questions and comments are very welcome and should be send...

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It also calculates standard indices of codon usage. It has both menu and command-line interfaces.The CodonW project was written...

AHREA is a sofware suite that makes finding Relative Expression Learners easy. It is written in...

mpiBLAST is an MPI based parallel implementation of NCBI BLAST. The project consists of a pair of programs that replace formatdb and blastall with versions that execute BLAST jobs in parallel on a cluster of computers with MPI installed. There are two...