POY

POY 4.1.2

POY is a phylogenetic analysis program that supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene regions, chromosomes, and whole genomes). POY is particular in that it can perform true alignment and phylogeny inference i.e. input...

Malign

Malign 2.8

The multiple alignment procedures implemented in MALIGN are close parallels to those used to search for minimum length cladograms. The logic and program commands will be clear to those familiar with programs such as Hennig86, NONA, and PAUP. Alignment...