Must have Bioinformatics for Linux
Staden Package is a fully developed set of DNA sequence assembly (Gap4), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.On the Gap4 front there have been several minor joining relatedimprovements in how it scores joins in Find...
The STEME project started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME.STEME’s EM approximation runs an order of magnitude more quickly than the MEME implementation for...
STEPS is a package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries. Our core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of...
Syntainia is an innovative application for visualization of multiple genomes. It presents a simple and intuitive user interface to view and manipulate relationships between groups of genes. With a clearer gene visualization, it is easier for the...
SyntenyMiner is an application to visualize and interrogate comparisons among multiple complete genome sequences. The interface provides a navigable view of matches to a reference genome sequence. Sequence matches between chromosomes of different genomes...
tapir is a Python tool that contains programs to estimate and plot phylogenetic informativeness for large datasets.Citing tapirWhen using tapir, please cite:- Faircloth BC, Chang J, Alfaro ME: tapir enables high throughput analysis of phylogenetic...
tigreBrowser is a gene expression model browser for results from tigre R package (http://www.bioconductor.org/packages/release/bioc/html/tigre.html).Installation:tigreBrowser requires Python version >=2.5. tigreBrowser can be installed with the following...
TRMiner is a Python utility that aims at scientific data curators. It allows to rapidly prune large collections of scientific publications to sentences relevant for a given mining goal.This is achieved in two steps. First, texts are tranlated into...
VULCAN project provides computational fluid dynamics analysis.VULCAN (Viscous Upwind aLgorithm for Complex flow ANalysis) offers computational fluid dynamics for subsonic speed through hypersonic turbulent reacting and non-reacting flows on a variety of...
