Must have Bioinformatics for Linux
ProteinShop is an interactive tool for manipulating protein structures. It was designed to quickly create a set of protein configurations using human knowledge and intuition. These configurations can be subjected to local or global optimization. Although...
pyNetConv is a Python library created to help the conversion of some network file formats.Since version 0.6, pyNetConv is capable to read/write (and convert from/to) the following file...
Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API.The quick start guide is here. More detailed documentation is available here.Questions and comments are very welcome and should be send...
PySCeS is a project developed by the Triple-J Group for Molecular Cell Physiology in order to try model and understand the complex processes and systems which make up the living cell.Features:cursor-pointer" onclick="spovl3hide();"> Application...
reciprocal_smallest_distance is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.Installing From a TarballDownload and untar...
RFLP planner is a tool that helps to plan a RFLP experiment: It finds restriction enzymes that cut a set of homologue DNA sequences in different ways and simulates the resulting gel- electrophoresis image. The program helps you to find the crucial...
Seal is a Python module that provides sequence alignment on Hadoop.Seal is a of MapReduce application for biological sequence alignment. It runs on Hadoop (http://hadoop.apache.org) through Pydoop (http://pydoop.sourceforge.net), a Python MapReduce and...
seriesoftubes is an extended pipeline for Solexa ChIP-seq data.Package...
Build systems like make are frequently used to create complicated workflows, e.g. in bioinformatics. snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in python...
SSuMMo is a library of functions designed around iteratively using hmmer to assign sequences to taxa. Results are highly annotated trees showing species / genus distribution within that community.Programs included with the source code include tools...
