SimTree

SimTree server receives two RNA secondary structures in parentheses representation. It returns a similarity score and a mapping between the similar regions of the two structures. Insert two sequences of RNA secondary structure or RNA primary sequence in FASTA format and paste the data then the application will compare the similarity. When inserting the RNA sequence in FASTA format the SimTree server uses the RNAfold module from the RNA Vienna Package in order to predict secondary structures.

Requirements:

Java Run-Time Environment