PyPedal is a tool for analyzing pedigree files.
It calculates several quantitative measures of genetic diversity from pedigrees, including average coefficients of inbreeding and relationship, effective founder numbers, and effective ancestor numbers.
Checks are performed catch common mistakes in pedigree files, such as parents with more recent birthdates or smaller ID numbers than their offspring and animals appearing as both sires and dams in the pedigree.
Pedigree visualization and report generation are possible.
PyPedal only makes use of information on pedigree structure, not individual genotypes.
Allelotypes can be assigned to founders for use in gene-dropping simulations to calculate the effective number of founder genomes, but no other measures of alleic diversity are currently supported.
Features:
nothing found
Requirements:
- gtk+
- An OSS or Alsa sound system
Comments not found