Best Bioinformatics for Linux
picme is a Python package that contains programs to estimate and plot phylogenetic informativeness for large datasets.InstallationFor the moment, the easiest way to install the program is:git clone git://github.com/faircloth-lab/picme.git /path/to/picmeTo...
Pathomx (formerly MetaPath) is an open source graphical software implemented in IPython, Qt and PyQt, designed from the ground up to act as an interactive utility for the visualization and analysis of metabolic data under GNU/Linux and other...
Ghemical is a computational chemistry software package released under the GNU GPL. It means that full source code of the package is available, and users are free to study and modify the package. Ghemical is written in C++.Ghemical project has a graphical...
LSim superposes macromolecular electron densities and computes a structural similarity score. Its computations scale linearly with the size of the molecules being compared.The LSim alignments are conceptually unrelated to biochemical structural elements...
ProteinShop is an interactive tool for manipulating protein structures. It was designed to quickly create a set of protein configurations using human knowledge and intuition. These configurations can be subjected to local or global optimization. Although...
Syntainia is an innovative application for visualization of multiple genomes. It presents a simple and intuitive user interface to view and manipulate relationships between groups of genes. With a clearer gene visualization, it is easier for the...
PEAT is a suite of programs for capturing, predicting and analyzing biophysical characteristics of proteins.See http://enzyme.ucd.ie/PEAT for documentation, instructions, screenshots etc.Requirements:cursor-pointer" onclick="spovl3hide();"> System...
edittag is an application collection for designing sets of edit metric sequence tags, checking sequence tags for conformation to the edit metric, and integrating sequence tags to platform-specific sequencing adapters and PCR primers. edittag differs from...
reciprocal_smallest_distance is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.Installing From a TarballDownload and untar...
Build systems like make are frequently used to create complicated workflows, e.g. in bioinformatics. snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in python...
