Best Bioinformatics for Linux

Adun project is an extensible biomolecular simulation program that includes data management and analysis capabilities.Adun provides advanced algorithms and protocols for molecular simulation which can be accessed from an intuitive user interface but also...

MacMolPlt is a modern graphics program for plotting 3-D molecular structures and normal modes (vibrations). Modern...

massXpert mass spectrometry package is a mass spectrometry environment for linear (bio-) polymers. It inherits all the innovations of GNU polyxmass, as it is a port of that project to a cross-platform development environment.What is new in this...

Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.The software implements two algorithms, bwa-short and BWA-SW. The former works for query...

goby is a Python API for reading binary data files created using the Goby next-gen data management framework.Normally, this directory comes as part of the complete Goby package, available from: http://goby.campagnelab.org/The complete package...

MACS2 is a model based analysis tool for ChIP-Seq data.With the improvement of sequencing techniques, chromatin immunoprecipitation followed by high throughput sequencing (ChIP-Seq) is getting popular to study genome-wide protein-DNA interactions. To...

PySCeS is a project developed by the Triple-J Group for Molecular Cell Physiology in order to try model and understand the complex processes and systems which make up the living cell.Features:cursor-pointer" onclick="spovl3hide();"> Application...

The STEME project started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME.STEME’s EM approximation runs an order of magnitude more quickly than the MEME implementation for...

SyntenyMiner is an application to visualize and interrogate comparisons among multiple complete genome sequences. The interface provides a navigable view of matches to a reference genome sequence. Sequence matches between chromosomes of different genomes...

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. NetAtlas identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across...