Best Bioinformatics for Linux

VULCAN project provides computational fluid dynamics analysis.VULCAN (Viscous Upwind aLgorithm for Complex flow ANalysis) offers computational fluid dynamics for subsonic speed through hypersonic turbulent reacting and non-reacting flows on a variety of...

Murka is a free, cross-platform and open source command-line software that helps users to easily solve the Phylogeny problem, simply by using Median Networks. It includes heuristic methods, exact algorithms, as well as a Steiner problem...

STEPS is a package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries. Our core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of...

CaPSID is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a...

AREM is a based on MACS (Model Based Analysis for ChIP-Seq data).High-throughput sequencing coupled to chromatin immuno- precipitation (ChIP-Seq) is widely used in characterizing genome-wide binding patterns of transcription factors, cofactors, chromatin...

Syntainia is an innovative application for visualization of multiple genomes. It presents a simple and intuitive user interface to view and manipulate relationships between groups of genes. With a clearer gene visualization, it is easier for the...

Orthanc is a completely free, open source, simple, lightweight, yet powerful RESTful standalone DICOM (Digital Imaging and Communications in Medicine) server that can be used in healthcare and medical research environments. It’s a command-line...

PEAT is a suite of programs for capturing, predicting and analyzing biophysical characteristics of proteins.See http://enzyme.ucd.ie/PEAT for documentation, instructions, screenshots etc.Requirements:cursor-pointer" onclick="spovl3hide();"> System...

LSim superposes macromolecular electron densities and computes a structural similarity score. Its computations scale linearly with the size of the molecules being compared.The LSim alignments are conceptually unrelated to biochemical structural elements...

TRMiner is a Python utility that aims at scientific data curators. It allows to rapidly prune large collections of scientific publications to sentences relevant for a given mining goal.This is achieved in two steps. First, texts are tranlated into...