Free Bioinformatics for Linux

massXpert mass spectrometry package is a mass spectrometry environment for linear (bio-) polymers. It inherits all the innovations of GNU polyxmass, as it is a port of that project to a cross-platform development environment.What is new in this...

bein is a miniature LIMS and workflow manager for bioinformatics, written in...

ProteinShop is an interactive tool for manipulating protein structures. It was designed to quickly create a set of protein configurations using human knowledge and intuition. These configurations can be subjected to local or global optimization. Although...

Staden Package is a fully developed set of DNA sequence assembly (Gap4), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.On the Gap4 front there have been several minor joining relatedimprovements in how it scores joins in Find...

MetagenomeDB is a Python library designed to easily store, retrieve and annotate metagenomic sequences. MetagenomeDB act as an abstraction layer on top of a MongoDB database. It provides an API to create and modify and connect two types of objects,...

CLC Sequence Viewer creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options.Here are some key features of "CLC Free Workbench":- GenBank...

LSim superposes macromolecular electron densities and computes a structural similarity score. Its computations scale linearly with the size of the molecules being compared.The LSim alignments are conceptually unrelated to biochemical structural elements...

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It also calculates standard indices of codon usage. It has both menu and command-line interfaces.The CodonW project was written...

MacMolPlt is a modern graphics program for plotting 3-D molecular structures and normal modes (vibrations). Modern...

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. NetAtlas identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across...