Free Educational & Science Software for Linux

MISO (Mixture of Isoforms) is a probabilistic framework written in Python that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples.By modeling the...

CaPSID is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a...

ESMF (Earth System Modeling Framework) is a program for building high-performance, flexible software infrastructure to increase ease of use, performance portability, interoperability, and reuse in climate, numerical weather prediction, data assimilation,...

Genepidgin is a suite of Python tools that assist in evaluation and assignment gene product names. There are three primary components:genepidgin *cleaner* standardizes gene names per UNIPROT naming guidelinesgenepidgin *compare* compares...

The STEME project started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME.STEME’s EM approximation runs an order of magnitude more quickly than the MEME implementation for...

Geant4 project is a toolkit for the simulation of the passage of particles through matter.Its application areas include high energy physics and nuclear experiments, medical, accelerator and space physics studies.What is new in this release:A new model of...

Build systems like make are frequently used to create complicated workflows, e.g. in bioinformatics. snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in python...

GPdotNET is artificial intelligence tool for applying Genetic Programming and Genetic Algorithm in modeling and optimization of various engineering problems. It is .NET (Mono) application written in C# programming language which can run on both Windows...

reciprocal_smallest_distance is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.Installing From a TarballDownload and untar...

NetworkX is a Python package for the creation, manipulation, and study of the dynamics, structure, and functions of complex networks.Features:Allows for 1M+ nodes, 10M+ edges Includes standard graph-theoretic and statistical physics functions Easy...