Top Bioinformatics for Linux

AHREA is a sofware suite that makes finding Relative Expression Learners easy. It is written in...

AREM is a based on MACS (Model Based Analysis for ChIP-Seq data).High-throughput sequencing coupled to chromatin immuno- precipitation (ChIP-Seq) is widely used in characterizing genome-wide binding patterns of transcription factors, cofactors, chromatin...

CWC Simulator is a C++ implementation of CWC, a calculus for the representation and simulation of biological systems. After a successful installation (see INSTALL) you'll be able to run simulations over CWC models, as shown in some examples (see...

Syntainia is an innovative application for visualization of multiple genomes. It presents a simple and intuitive user interface to view and manipulate relationships between groups of genes. With a clearer gene visualization, it is easier for the...

checkmyclones is a software that provides tools to check Sanger sequencing results (or any plain-text or FASTQ files) against a set of reference sequences, provided in any reasonable format (including...

tigreBrowser is a gene expression model browser for results from tigre R package (http://www.bioconductor.org/packages/release/bioc/html/tigre.html).Installation:tigreBrowser requires Python version >=2.5. tigreBrowser can be installed with the following...

picme is a Python package that contains programs to estimate and plot phylogenetic informativeness for large datasets.InstallationFor the moment, the easiest way to install the program is:git clone git://github.com/faircloth-lab/picme.git /path/to/picmeTo...

tapir is a Python tool that contains programs to estimate and plot phylogenetic informativeness for large datasets.Citing tapirWhen using tapir, please cite:- Faircloth BC, Chang J, Alfaro ME: tapir enables high throughput analysis of phylogenetic...

STEPS is a package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries. Our core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of...

NEO (Neural Ensemble Objects) and is a project to provide a common set of base classes to be used in neural data analysis, with the aim of getting OpenElectrophy, NeuroTools and maybe other projects with similar goals more close together.Two major...