neuroinfo-toolkit is a general-purpose software development toolkit that emphasizes Neuroinformatics, Neuroimaging, and other Neuroscience research.
Installation:
We recommend reading: Installation
If you're sure you have all dependencies installed:
easy_install neuroinfo_toolkit
Supported Platforms
Currently developed on
* Ubuntu (Debian) 10.10
Tested on
* Ubuntu (Debian) 10.04+
* Red Hat Enterprise Linux 5+/CentOS 5+
* Mac OS X 10.5+ (not extensively tested)
* Windows 7 w/ Cygwin (not extensively tested)
Example Code
#!/usr/bin/env python
from neuro.filesystem import *
from neuro.nifti import Nifti
file = "/data/file.nii.gz"
nifti = Nifti(file)
nifti.swapOrientation()
ts = nifti.getTimeseries(1, 1, 1)
filePutContents("~/timeseries.txt", ts)
Requirements:
- Python
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