OpenElectrophy is a framework to facilitate manipulation, storage and analysis of electrophysiological data. It can import data from many different file formats and store them in a single SQL-type database.Analysis tools included in OpenELectrophy are...

SSuMMo

SSuMMo 0.3

SSuMMo is a library of functions designed around iteratively using hmmer to assign sequences to taxa. Results are highly annotated trees showing species / genus distribution within that community.Programs included with the source code include tools...

goby

goby 2.0

goby is a Python API for reading binary data files created using the Goby next-gen data management framework.Normally, this directory comes as part of the complete Goby package, available from: http://goby.campagnelab.org/The complete package...

pysam

pysam 0.7.2

Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API.The quick start guide is here. More detailed documentation is available here.Questions and comments are very welcome and should be send...

TRMiner

TRMiner 1.1

TRMiner is a Python utility that aims at scientific data curators. It allows to rapidly prune large collections of scientific publications to sentences relevant for a given mining goal.This is achieved in two steps. First, texts are tranlated into...

Seal

Seal 20120307

Seal is a Python module that provides sequence alignment on Hadoop.Seal is a of MapReduce application for biological sequence alignment. It runs on Hadoop (http://hadoop.apache.org) through Pydoop (http://pydoop.sourceforge.net), a Python MapReduce and...