CodonW

CodonW 1.4.4

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It also calculates standard indices of codon usage. It has both menu and command-line interfaces.The CodonW project was written...

LSim

LSim 1.0.0

LSim superposes macromolecular electron densities and computes a structural similarity score. Its computations scale linearly with the size of the molecules being compared.The LSim alignments are conceptually unrelated to biochemical structural elements...

CLC DNA Workbench creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.CLC DNA Workbench is available on Windows,...

MetagenomeDB

MetagenomeDB 0.2.2

MetagenomeDB is a Python library designed to easily store, retrieve and annotate metagenomic sequences. MetagenomeDB act as an abstraction layer on top of a MongoDB database. It provides an API to create and modify and connect two types of objects,...

Staden Package

Staden Package 1.7.0 / 2.0.0 Beta 8

Staden Package is a fully developed set of DNA sequence assembly (Gap4), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.On the Gap4 front there have been several minor joining relatedimprovements in how it scores joins in Find...

ProteinShop is an interactive tool for manipulating protein structures. It was designed to quickly create a set of protein configurations using human knowledge and intuition. These configurations can be subjected to local or global optimization. Although...

E-Cell System is a concept of constructing virtual cells on computers.E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells, architected by Kouichi Takahashi and...